CDS

Accession Number TCMCG057C31298
gbkey CDS
Protein Id XP_018433476.1
Location join(6082540..6083072,6083142..6083318,6083477..6083626,6083714..6084082,6084316..6084499,6084582..6084644)
Gene LOC108805971
GeneID 108805971
Organism Raphanus sativus

Protein

Length 491aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018577974.1
Definition PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1A-like isoform X3 [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category O
Description E3 ubiquitin-protein ligase synoviolin-like
KEGG_TC -
KEGG_Module M00403        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko04121        [VIEW IN KEGG]
KEGG_ko ko:K10601        [VIEW IN KEGG]
EC 2.3.2.27        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko04120        [VIEW IN KEGG]
ko04141        [VIEW IN KEGG]
map04120        [VIEW IN KEGG]
map04141        [VIEW IN KEGG]
GOs GO:0000151        [VIEW IN EMBL-EBI]
GO:0000153        [VIEW IN EMBL-EBI]
GO:0000209        [VIEW IN EMBL-EBI]
GO:0000835        [VIEW IN EMBL-EBI]
GO:0000836        [VIEW IN EMBL-EBI]
GO:0002020        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004842        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005783        [VIEW IN EMBL-EBI]
GO:0005789        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006486        [VIEW IN EMBL-EBI]
GO:0006487        [VIEW IN EMBL-EBI]
GO:0006508        [VIEW IN EMBL-EBI]
GO:0006511        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006986        [VIEW IN EMBL-EBI]
GO:0007154        [VIEW IN EMBL-EBI]
GO:0007165        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009057        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009100        [VIEW IN EMBL-EBI]
GO:0009101        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010243        [VIEW IN EMBL-EBI]
GO:0010498        [VIEW IN EMBL-EBI]
GO:0012505        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016567        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0018193        [VIEW IN EMBL-EBI]
GO:0018196        [VIEW IN EMBL-EBI]
GO:0018279        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0019787        [VIEW IN EMBL-EBI]
GO:0019899        [VIEW IN EMBL-EBI]
GO:0019941        [VIEW IN EMBL-EBI]
GO:0023052        [VIEW IN EMBL-EBI]
GO:0030163        [VIEW IN EMBL-EBI]
GO:0030433        [VIEW IN EMBL-EBI]
GO:0030968        [VIEW IN EMBL-EBI]
GO:0031984        [VIEW IN EMBL-EBI]
GO:0032446        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034620        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0034976        [VIEW IN EMBL-EBI]
GO:0035966        [VIEW IN EMBL-EBI]
GO:0035967        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0036503        [VIEW IN EMBL-EBI]
GO:0036513        [VIEW IN EMBL-EBI]
GO:0042175        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0043161        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043413        [VIEW IN EMBL-EBI]
GO:0043632        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044257        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044265        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044322        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044425        [VIEW IN EMBL-EBI]
GO:0044432        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051082        [VIEW IN EMBL-EBI]
GO:0051603        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0061630        [VIEW IN EMBL-EBI]
GO:0061659        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070085        [VIEW IN EMBL-EBI]
GO:0070647        [VIEW IN EMBL-EBI]
GO:0070887        [VIEW IN EMBL-EBI]
GO:0071310        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0098796        [VIEW IN EMBL-EBI]
GO:0098827        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:1901135        [VIEW IN EMBL-EBI]
GO:1901137        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1901565        [VIEW IN EMBL-EBI]
GO:1901566        [VIEW IN EMBL-EBI]
GO:1901575        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1901698        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1990234        [VIEW IN EMBL-EBI]
GO:1990381        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGATCCGATTAAGAACCTACGCATGCCTCAGCTTCATCGCAACCCTCTCCATAATCCACCACGCCTTCTCCATCCGAGGCCAGTTCTACCCGGCCGCCGTCTACCTCTCCACCTCCAAGATCAGCCTAATGCTCCTCCTCAACATGTGCCTCGTCCTCATGCTCGCCCTCTGGCACCTCGTCAAGCTCCTCTTCCTCGGCTCCCTCCGCGAAGCCGAGATCGAGCGGCTCAACGAGCAGGCATGGAGAGAGCTCATGGAGATCCTCTTCGCCATCACCATCTTCCGCCAAGACTTCTCCAGTGGCTTCCTCCCCCTTGTCGTCACGCTTCTCCTCATCAAGGCCTTGCACTGGCTCGCTCAGAAGCGAGTCGAGTTCATCGAGACGGCTCCTAACGTCACCAAGCTCGCTCACGTTCGTATTGTTTCTTTCTTGGCGTTTCTTCTTGTTGTGGATTCGATCTTTATGTATAGCTCGGTTCGGCATTTGGTTCGGTCTAGGCAGGCCTCCGTTTCTCTCTTCTTCTCTTTCGAGTATATGATTTTGGCGACGACGACGGTGGCGATTTTTGTGAAGTATGTGTTCTTTGTTACTGATATGATAATGGATGGTCAGTGGGAGAAGAAGCCGGTTTATACTTTCTATCTTGAGCTTATCCGTGACCTGCTTCATTTGTCAATGTACATTTGCTTCTTCTTTGTCATCTTCATGAACTATGGTGTGCCTTTGCATTTGTTGAGGGAGCTTTATGAGACCTTCAGGAACTTCCAGATTCGTGTTTCTGATTACCTTCGTTATCGTAAAATCACTTCCAATATGAACGACAGGTTCCCTGATGCAACTCCTGAAGAACTTACTGCAAGTGATGCCACATGTATCATATGCCGTGAAGAAATGACAACTGCGAAGAAGCTGATATGCGGGCATCTCTTCCATGTACATTGTCTTCGATCATGGTTGGAACGACAGCAGACATGTCCTACTTGCAGGGCACTTGTTGTACCTCCTGAGAATGGCACATCTACAACAGCTGCAGGGCAACGAGGATTGCACCAAGGTTCTCAGCAAGGTACTTCAAGCTCAGGTGGCCAGGGATCTGAAACGCGTTCTTCTGCTGGCGGTTCCAATGATAGTTTGAGCAGGCATCACGCCAGACTTCAAGCAGCTGCTTCTGCAGCCTCCATGTATGGGAAGTCAATGGTGTATCCATCTGCAGACAAAGTAGCATGGTCGCCGGGTTTTCCTGGTACAGAGAAAGCCTCAGCAGAACCACATGGAACCCATCCTTCATCATCCTCAGCGGCTTCTCAGCTTCCTCAACAAAACCTTCCTGGTGAAAACTCTCGTGCCTATGCAAATATCCCAGCGGACAAGCTGGAAACGATGAAAAAATCTCTGGAGAGCCAGCTCGAGCGTTATGTTGTAGACTTTGCGAAACAGACTTCAGTTTCTGGAGTCCACAGGAGAAGCAGATGA
Protein:  
MIRLRTYACLSFIATLSIIHHAFSIRGQFYPAAVYLSTSKISLMLLLNMCLVLMLALWHLVKLLFLGSLREAEIERLNEQAWRELMEILFAITIFRQDFSSGFLPLVVTLLLIKALHWLAQKRVEFIETAPNVTKLAHVRIVSFLAFLLVVDSIFMYSSVRHLVRSRQASVSLFFSFEYMILATTTVAIFVKYVFFVTDMIMDGQWEKKPVYTFYLELIRDLLHLSMYICFFFVIFMNYGVPLHLLRELYETFRNFQIRVSDYLRYRKITSNMNDRFPDATPEELTASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQQTCPTCRALVVPPENGTSTTAAGQRGLHQGSQQGTSSSGGQGSETRSSAGGSNDSLSRHHARLQAAASAASMYGKSMVYPSADKVAWSPGFPGTEKASAEPHGTHPSSSSAASQLPQQNLPGENSRAYANIPADKLETMKKSLESQLERYVVDFAKQTSVSGVHRRSR